PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g026080.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 216aa    MW: 24703.2 Da    PI: 8.2076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g026080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-143884354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r+h+e+E+rRRdriN  +++Lr+l+P++     +K++Ka+ L  +v+++k+L
  Sopen03g026080.1 38 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAALLGSVVDHVKDL 84
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-143292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-113385No hitNo description
PROSITE profilePS5088816.3553584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-153887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-123884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.10E-4123174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MENSFSSEYW LESCDVNHYL VPQVQNYLPQ ERRESASRSH SEAEKRRRDR INAQLSTLRK  60
LIPTSEKMDK AALLGSVVDH VKDLKGKTAE ISKVLNTPTD TDEVTIEHLN EEEDNKGCLI  120
KASFCCDDRP ELFSELQRGI KNLKLRMMEA DITSLGGRIK CVFMLCPNEN YVNDVCMNSL  180
KKSLTVVLSR IAISPSTSNY RIKSKRQRFF LPAHCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207KSKRQR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069202.11e-161transcription factor bHLH51-like
SwissprotQ9XEF02e-46BH051_ARATH; Transcription factor bHLH51
TrEMBLM1CNH41e-133M1CNH4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000712931e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]