PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g027860.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 491aa    MW: 54141.9 Da    PI: 4.9337
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g027860.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36181102103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sws+++nsfvvl+  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g k+ll
  Sopen03g027860.2  18 FLNKTYDMVDDPSTDSVVSWSKSNNSFVVLNVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGYKHLL 101
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i r+k +
  Sopen03g027860.2 102 KSISRRKPS 110
                       ******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.2E-6014107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-3815107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-3416107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.0E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-201841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-205668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDGVHEATVA GNLTSPPFLN KTYDMVDDPS TDSVVSWSKS NNSFVVLNVP EFARDILPKY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGYKHL LKSISRRKPS QLQGHQQTTS  120
KVPNASVASC VEVGKFGIEE EVERLKRDKD VLMQELVKLR QQQQETDHQL VIVGQRVQLM  180
ESRQQQMMAF LAKAMQSPGF VAQLVHQQNG NNRHITGLNK KRRLPEQAEE NVACKPVNAL  240
QDGQVVRYQP SMTEAAKALL QQILRINASG RLDNRLNTNG GCLTNNPLPP KNSLGSSGAS  300
SCISSVTLSK VLSTSSQPNP ISDSGFPFNS CSSIISETQS STTVVPGEAN IPILPEADAL  360
NSQTVHDLPE FSHTLGVTDL NMSETGNVPD MDTTKCILDD LTMIVSDEFS ANTDGDVLLD  420
DMPKLPAIND IFWDQILSAT PASPLTGDTD EIGSLVVEED FLGVQESDWD KLKHMHNLTE  480
QMGLLSSAAQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-26910711120Heat shock factor protein 1
5d5u_B1e-261010721129Heat shock factor protein 1
5d5v_B1e-261010721129Heat shock factor protein 1
5d5v_D1e-261010721129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069967.10.0heat stress transcription factor A-1
RefseqXP_015069968.10.0heat stress transcription factor A-1
RefseqXP_027770993.10.0heat stress transcription factor A-1
SwissprotQ84T611e-143HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A3Q7FMN90.0A0A3Q7FMN9_SOLLC; Uncharacterized protein
STRINGSolyc03g097120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-115heat shock transcription factor A1E
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]