PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g028400.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 256aa MW: 29511.2 Da PI: 8.6209

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g028400.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142	3.5e-44	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Ptdee+v +yL +k+ + +l++ ++i+e++i+k +Pw+Lp v e++ yfFs+++ ky++g+r+nrat gyWk +g dk+++ Sopen03g028400.1 14 LPPGFRFQPTDEEIVFQYLIRKTFSCPLPA-SIIPEINICKNDPWNLPGDV---EQDRYFFSNKEAKYRNGNRANRATIGGYWKPSGLDKQII 102 79**************************.89***********554...5689*****************************99 PP NAM 94 sk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++ ++ +g+kktLvfykg +a+++ +tdW+mheyrl Sopen03g028400.1 103 CSkRKPIIGMKKTLVFYKGkSASQAYRTDWIMHEYRL 139 97455569*****995678889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-49	11	178	IPR003441	NAC domain
PROSITE profile	PS51005	49.538	14	178	IPR003441	NAC domain
Pfam	PF02365	1.1E-23	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDKFNFVKDG AIKLPPGFRF QPTDEEIVFQ YLIRKTFSCP LPASIIPEIN ICKNDPWNLP 60 GDVEQDRYFF SNKEAKYRNG NRANRATIGG YWKPSGLDKQ IICSKRKPII GMKKTLVFYK 120 GKSASQAYRT DWIMHEYRLV LPKNSSSNLH VHFNKSSSQQ NNSLVQIGNW VLCHIFLKKR 180 NGKCDEEIIE ANYHDYNYKA NDEHNNVDYY DFMREDNLSD TRAAASSCSS SLSINNYDAN 240 EVSSCPSSLL QHQQPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-39	12	183	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-39	12	183	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-39	12	183	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-39	12	183	15	170	NO APICAL MERISTEM PROTEIN
4dul_A	6e-39	12	183	15	170	NAC domain-containing protein 19
4dul_B	6e-39	12	183	15	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-167	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069739.1	0.0	NAC domain-containing protein 83
Swissprot	Q9FY93	2e-68	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A3Q7GCT8	1e-173	A0A3Q7GCT8_SOLLC; Uncharacterized protein
STRING	Solyc03g097650.2.1	1e-174	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-70	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]