PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g029910.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22584.1 Da    PI: 10.4691
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g029910.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.87.1e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtfskRrng+lKKA+ELS+LCdaeva+++fs++gk y ++s
  Sopen03g029910.1  9 KRIENQTNRQVTFSKRRNGLLKKAYELSILCDAEVALLLFSPSGKAYHFAS 59
                      79**********************************************986 PP
2K-box67.83.7e-23851711399
             K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        +e ++++++ + + i++L+   +hl Ge+L++L +keL+qLe+qL  ++++iRskK +++ e+i+ l+++ k l+een  L+k+++
  Sopen03g029910.1  85 AMEVWRTKIDDMTRTIHELEARDKHLTGEELSNLGMKELKQLERQLRVGVERIRSKKRRIISEHIHWLKRRHKILHEENIHLQKQVK 171
                       578899***************9**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.604161IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-41160IPR002100Transcription factor, MADS-box
CDDcd002656.50E-40278No hitNo description
SuperFamilySSF554551.07E-31280IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2186170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.57786178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGRGKVELKR IENQTNRQVT FSKRRNGLLK KAYELSILCD AEVALLLFSP SGKAYHFASH  60
DIERTILRYK NEVGLSKNSD QGPIAMEVWR TKIDDMTRTI HELEARDKHL TGEELSNLGM  120
KELKQLERQL RVGVERIRSK KRRIISEHIH WLKRRHKILH EENIHLQKQV KLYEVEGSSR  180
ILDTNPSELL SKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-23169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-23169169Myocyte-specific enhancer factor 2B
1tqe_R1e-23169169Myocyte-specific enhancer factor 2B
1tqe_S1e-23169169Myocyte-specific enhancer factor 2B
6c9l_A1e-23169169Myocyte-specific enhancer factor 2B
6c9l_B1e-23169169Myocyte-specific enhancer factor 2B
6c9l_C1e-23169169Myocyte-specific enhancer factor 2B
6c9l_D1e-23169169Myocyte-specific enhancer factor 2B
6c9l_E1e-23169169Myocyte-specific enhancer factor 2B
6c9l_F1e-23169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2706240.0KF270624.1 Solanum lycopersicum cultivar Florida Petite TM8-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069429.11e-139MADS-box transcription factor 6-like
TrEMBLA0A0B4N0Q91e-135A0A0B4N0Q9_SOLLC; TM8-like protein
STRINGPGSC0003DMT4000393131e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-43AGAMOUS-like 6