PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g030580.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 261aa MW: 28501 Da PI: 7.0435

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g030580.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	125.7	1.8e-39	48	151	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql+ fw++q i + df+ h+lP++r+kki+k d++v+misae+P+ll+kacelfi elt rsw +a+e++rrtlk d + +++t+ fd Sopen03g030580.1 48 QLQLFWAAQlqeIMHIRDFRGHSLPISRMKKIMKLDKEVRMISAESPILLAKACELFIQELTHRSWFKAQECQRRTLKNIDFITMLKETELFD 140 89****966666789************************************************************************ PP NF-YC 91 flvdivprdel 101 flvd + de+ Sopen03g030580.1 141 FLVDAISMDET 151 ****99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.14E-21	58	142	IPR009072	Histone-fold
Pfam	PF00808	3.0E-16	70	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.9E-25	71	146	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MASHSDPVAA KAEVAAAVNA EAAAAAVAVA EATAQPIVNA NDYLLQQQLQ LFWAAQLQEI 60 MHIRDFRGHS LPISRMKKIM KLDKEVRMIS AESPILLAKA CELFIQELTH RSWFKAQECQ 120 RRTLKNIDFI TMLKETELFD FLVDAISMDE TEEEAPTYVP RMLGNIPNRI PYCYSPMGPP 180 APPMVPLAPS IGPPAPSMGP PAPSMPAPPR GIMGRRAMPW VAPSMHVPPP LYPRQFGWYA 240 TGGNPYATGG SSGQGSGDPQ R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-29	55	146	2	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771117.1	0.0	nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	3e-42	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A3Q7FNU8	1e-127	A0A3Q7FNU8_SOLLC; Uncharacterized protein
STRING	Solyc03g111460.1.1	1e-128	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15807	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	7e-35	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]