PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g032010.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 336aa    MW: 36896.9 Da    PI: 6.8657
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g032010.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.58.1e-4064124262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       +++++kcprCdst+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  Sopen03g032010.1  64 HDHSIKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 124
                       57889*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2958118IPR003851Zinc finger, Dof-type
PfamPF027014.5E-3366122IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.96668122IPR003851Zinc finger, Dof-type
PROSITE patternPS01361070106IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGITSLQVCM DSSDWLQGTI HEDCAGGGGG MDSSSSPSGA DHINNLMTCS RPIIVDQRRL  60
RPPHDHSIKC PRCDSTHTKF CYYNNYSLTQ PRYFCKTCRR YWTKGGTLRN IPVGGGCRKN  120
KKVSSKKSST NTNESTPLST TTSNNNNNIP EMPFPHHFMS STNFGHHGNF MLENQAPIID  180
FMESKYEALV GSSSTITTNS RLNQDLFLGN GDNNNNNIGM MMMSGSSTTN GFGHDHDNIV  240
ATNYPFGITS IMDSNNGNNF GMLLPYENHH EEVQNINAVE MKPNPKILSL EWHDDQLGGS  300
NKESPFGYYS GNGGLGSWTG LMNGNCYGSS ATNPLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068323.10.0dof zinc finger protein DOF5.6-like
TrEMBLM1BJB30.0M1BJB3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000465980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48952240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.17e-44Dof family protein