PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g032580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 314aa    MW: 35010.9 Da    PI: 5.7192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g032580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-123172346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      ++T++E+el++++++  G++ W+ Ia+ +  gRt++++k+ w++
  Sopen03g032580.1 31 SFTPQEEELIIKLHATIGSR-WSIIAQQLA-GRTDNDVKNLWNT 72
                      79******************.*********.**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.62E-181482IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-61636IPR009057Homeodomain-like
PROSITE profilePS5129420.2552478IPR017930Myb domain
SMARTSM007171.0E-102876IPR001005SANT/Myb domain
CDDcd001671.37E-83174No hitNo description
PfamPF002492.8E-113172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-183775IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSKKSGYGRC GGRNQKQRWN NRLKPDLKQD SFTPQEEELI IKLHATIGSR WSIIAQQLAG  60
RTDNDVKNLW NTKLKKKLSA MGIDPVTHKP FSQILTDYGN IGGFPKARTR FVSLNRELKG  120
AFMSRPEQLQ HSLQNFQNFN SLCVKLPKTE ASEQSFFSNN QDSSNINQPP VDLFSELQAI  180
KFVTEASNYN SPKAVFSHNP NPITDCSTSS PLSSSSSSSA SHSLAENQVN WCDYLLDDAF  240
LPSNFKDQED TLTTEEKLVC GGAEDGSNNV PSTKDFENSL STKGTSSSSF VEAMLECEND  300
MFLNFPGLSE DPFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1487839108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067612.10.0transcription factor MYB35
TrEMBLA0A3Q7GFI40.0A0A3Q7GFI4_SOLLC; Uncharacterized protein
STRINGSolyc03g113530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.16e-32MYB family protein