PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g032660.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 316aa    MW: 34226 Da    PI: 9.6548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g032660.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-14113157347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Sopen03g032660.1 113 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 157
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.67106162IPR017930Myb domain
SuperFamilySSF466896.58E-17108162IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-17109160IPR006447Myb domain, plants
SMARTSM007171.8E-10110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-11112157IPR009057Homeodomain-like
CDDcd001671.91E-9113158No hitNo description
PfamPF002491.9E-11113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MMSSFCSQSA NDGSFTCAGE SSPAAVSVGG DVGGGEIMLF GVRVKVDPMR KSVSLNNLSQ  60
YEQPNSNDNN NNNSNSGNNN DASKVAADEG YASADDAVPH HSGSGRERKR GVPWTEEEHK  120
LFLLGLQKVG KGDWRGISRN FVKTRTPTQV ASHAQKYFLR RTNLNRRRRR SSLFDITTDS  180
VSVLPTEETK NLQRHSIPSL PSVETSKMNA FQVTSVPVNF GPVMLPENPI ESPILRQGNQ  240
SYYNGSSSIF LRPAPVVVSL PNSSKTADFN LNQSSAMETS SLSLTLSLSP SSSSTRHSGF  300
QVMSNFKNGE SIISVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069995.10.0transcription factor MYB1R1-like
SwissprotQ2V9B07e-96MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A3Q7FSP51e-172A0A3Q7FSP5_SOLLC; Uncharacterized protein
STRINGSolyc03g113620.2.11e-173(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25742351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.23e-58MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]