PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g033300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 233aa    MW: 27308.6 Da    PI: 4.9822
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g033300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.72.9e-164100298
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       p+G+rFhPtd el+ +yLk+  +g+ +  e++ i+ vdiy    Pw++   ++ eek  yf ++ +k++++ +r +r+ ++g+W+ +  ++ +
  Sopen03g033300.1   4 PMGIRFHPTDTELI-NYLKRFFKGELCLHEQCpIQFVDIYGDqPPWEIF-GANYEEKFRYFITPLKKQKSEYTRFSRICAKGTWQGQTGEHLI 94 
                       89************.9*********96665666*******87368***6.555677788**************************77766777 PP

               NAM  93 lskkge 98 
                        +++++
  Sopen03g033300.1  95 RRNRTA 100
                       665333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-132119IPR003441NAC domain
PROSITE profilePS5100512.7553171IPR003441NAC domain
PfamPF023658.6E-9496IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSKPMGIRFH PTDTELINYL KRFFKGELCL HEQCPIQFVD IYGDQPPWEI FGANYEEKFR  60
YFITPLKKQK SEYTRFSRIC AKGTWQGQTG EHLIRRNRTA PVENNHIPKE DFVVCRIKKN  120
KKGKEKNVDH VMEAQDGDVA GIINHMLLEP NHNNDYSIRE DQVRVCDAVE ATTSEFDVQN  180
STYEATTTEK KETTLEVQEG HGVDDIRSNE LQEEMYRAFD DIPFDIPDEW LQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345197.11e-145PREDICTED: NAC transcription factor 29-like
TrEMBLM1DLM51e-143M1DLM5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000909791e-144(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-08NAC domain containing protein 35