PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g033330.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 180aa    MW: 20818.3 Da    PI: 9.3581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g033330.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.9e-051262654
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS
               HLH  6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54
                      +  E++RR +++   ++L +l+P+  + +s K  ++  +   +A+ YI +L
  Sopen03g033330.1 12 KTQEKNRRIQMKYLSSKLFSLIPPHHHHYSAKdmVTQQDQIDQAITYIEKL 62
                      578*********************66777777789*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.72E-7866IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-51166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MENTSPEKLD RKTQEKNRRI QMKYLSSKLF SLIPPHHHHY SAKDMVTQQD QIDQAITYIE  60
KLKERVDVLM RRKDKIIAQG TSDDSKKFMP STSCSNIKLP MIEVRELGST MEVILVSCLQ  120
KKFTMQEVII ILEEEGVQVV TANFSTIGDK VYYTIHAQVK ITRLGVDASR VYLRLQNLIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069458.21e-131transcription factor bHLH162-like
TrEMBLA0A3Q7FR921e-128A0A3Q7FR92_SOLLC; Uncharacterized protein
STRINGSolyc03g114230.1.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-29bHLH family protein