PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g033540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 212aa    MW: 24817.3 Da    PI: 10.7236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g033540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.7e-163281255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ GVr+++ +grWvAeI+  s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Sopen03g033540.1 32 RFIGVRQRP-SGRWVAEIKQTS---QKLRLWLGTFDKAEEAAMAYDSAARLLRG 81
                      689******.7******99932...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.60E-303191No hitNo description
PfamPF008473.3E-113281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-273289IPR001471AP2/ERF domain
SMARTSM003801.3E-303295IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-193289IPR016177DNA-binding domain
PROSITE profilePS5103218.943289IPR001471AP2/ERF domain
PRINTSPR003677.5E-73344IPR001471AP2/ERF domain
PRINTSPR003677.5E-75571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MENSQSPSKS LNNSSKNIQQ KINPISSNDG KRFIGVRQRP SGRWVAEIKQ TSQKLRLWLG  60
TFDKAEEAAM AYDSAARLLR GKSAKTNFNN HGIFKPNEEN YSLLEKDPRL YQLMKHAIMK  120
KFAGKYQNNE CLETEETENR NPDRCRNNVR RVKHWMQRFI DRFLLLYLSL FREQIDEPLP  180
PVFSPNKRTR TDQLSTLVSH RSNLKLTSKM TI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068974.18e-97ethylene-responsive transcription factor ERN1-like
TrEMBLA0A3Q7FSJ64e-94A0A3Q7FSJ6_SOLLC; Uncharacterized protein
STRINGSolyc03g114440.1.17e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-19related to AP2 11