PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g034440.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 520aa MW: 58484.1 Da PI: 4.3501

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g034440.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.9e-07	260	307	3	47
SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+el+ ++v + lG++ W+ a +++ R +++++s+++++ Sopen03g034440.1 260 KWSEEEEELFHEVVlsnpASLGNNFWNHLAVEFP-SRRREELVSYYFNV 307 8***********4444456777******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0021	257	310	IPR001005	SANT/Myb domain

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MVQKRPFGEE DLYEVSSKQP RHEPSCHLDS VLELSRESVA VDAYASGGDE DNSSKIFPDA 60 NKKFDSHVVA EILFSSEKET EMGVHGSASN SSWPTSSTSE EDNRPEALFH RSTSPEYYYF 120 DHSFRAAHHR EIYSSLSSNP QKMVPIGPDF QAEIPEWTPY SNKDKPCIEG IHETVSSPSQ 180 ANENKLAGRI IIPMPKMEQL ADQVENIGER RVECSCEDKG SIRCVQLDVI EAREKLKLAL 240 GEETFVRLGF CDMGEVVAEK WSEEEEELFH EVVLSNPASL GNNFWNHLAV EFPSRRREEL 300 VSYYFNVFIL RKRAEQNRFD PLNIDSDNDE WHDAVDDADE AAKMTDEDED SVVESPAHHN 360 GLSYNMIHED RDRRTYDEDA LEAICEDYKP VNFGSRKVFT DVQESCPSKF FDSNNSFKVG 420 MQPQDQGLSS KVVESCTTDA AGVTSESSLG KTNNDNHWAS DIAGMGSGTK HDSLLESCNG 480 KEWDGGYLNC ARNEVGLVPT PTMIEEVFGD GAWIYKSRDG

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MVQKRPFGEE DLYEVSSKQP RHEPSCHLDS VLELSRESVA VDAYASGGDE DNSSKIFPDA  60
NKKFDSHVVA EILFSSEKET EMGVHGSASN SSWPTSSTSE EDNRPEALFH RSTSPEYYYF  120
DHSFRAAHHR EIYSSLSSNP QKMVPIGPDF QAEIPEWTPY SNKDKPCIEG IHETVSSPSQ  180
ANENKLAGRI IIPMPKMEQL ADQVENIGER RVECSCEDKG SIRCVQLDVI EAREKLKLAL  240
GEETFVRLGF CDMGEVVAEK WSEEEEELFH EVVLSNPASL GNNFWNHLAV EFPSRRREEL  300
VSYYFNVFIL RKRAEQNRFD PLNIDSDNDE WHDAVDDADE AAKMTDEDED SVVESPAHHN  360
GLSYNMIHED RDRRTYDEDA LEAICEDYKP VNFGSRKVFT DVQESCPSKF FDSNNSFKVG  420
MQPQDQGLSS KVVESCTTDA AGVTSESSLG KTNNDNHWAS DIAGMGSGTK HDSLLESCNG  480
KEWDGGYLNC ARNEVGLVPT PTMIEEVFGD GAWIYKSRDG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015071089.1	0.0	uncharacterized protein LOC107015354
Refseq	XP_015071090.1	0.0	uncharacterized protein LOC107015354
TrEMBL	M1CA31	0.0	M1CA31_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400063110	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25