PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g034840.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 331aa MW: 38159.1 Da PI: 8.5777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g034840.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.6e-54	19	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL kkv + ++++ +i +vd++k+ePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke++ Sopen03g034840.1 19 LPPGFRFHPTDEELITHYLSKKVVDMNFSA-IAIGDVDMNKIEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIF 110 79***********************999.88***********98999************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++lvg+kktLvfy+grap+gekt+Wv heyrle Sopen03g034840.1 111 R-GRSLVGMKKTLVFYRGRAPRGEKTNWVTHEYRLE 145 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-61	14	169	IPR003441	NAC domain
PROSITE profile	PS51005	58.126	19	169	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	20	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MMENFSASVK MDDQQQMELP PGFRFHPTDE ELITHYLSKK VVDMNFSAIA IGDVDMNKIE 60 PWELPWKAKI GEKEWYFFCV RDKKYPTGLR TNRATAAGYW KATGKDKEIF RGRSLVGMKK 120 TLVFYRGRAP RGEKTNWVTH EYRLEGRLSL NNLPKTVKND WVICRVFQKT TGGKKIHISG 180 LVRANSDENE MVNSVLPPLT DSSPSHVHCF SNYVTTQKNQ ENNMINSFNN SPNFPLLSNS 240 IDIFQRNSLP NSFTWNQNVP LQHNFPQPGS FPIQDPATLR NLLENYGQNI QHQSFKKETD 300 MISVSQETGI STDRNTEITS AQQDLDCFWT Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	12	175	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	12	175	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	12	175	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	12	175	10	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-55	12	175	10	171	NAC domain-containing protein 19
4dul_B	1e-55	12	175	10	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015068220.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3Q7FU25	0.0	A0A3Q7FU25_SOLLC; Uncharacterized protein
STRING	Solyc03g115850.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-122	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]