PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g034910.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 138aa MW: 15654 Da PI: 10.3817

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g034910.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.6	5e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++s rq t++kRr gilKKA+E+SvLCd+++ +++fs+tgk Sopen03g034910.1 9 KRLESHSTRQSTYCKRRCGILKKAQEISVLCDIDIILLLFSPTGK 53 6899***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.679	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.5E-23	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.2E-23	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-17	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MGRVRLSVKR LESHSTRQST YCKRRCGILK KAQEISVLCD IDIILLLFSP TGKPTLFQGG 60 QSNFDEIIAK FAQLTPQERA KRKLESLETL RKTFKKLDND IGVPEFLDAS NGSGRLTSLH 120 KAQQSPTWRL EEFQLSST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	9e-16	1	92	1	90	MEF2 CHIMERA
6byy_B	9e-16	1	92	1	90	MEF2 CHIMERA
6byy_C	9e-16	1	92	1	90	MEF2 CHIMERA
6byy_D	9e-16	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	2e-98	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771309.1	4e-74	agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	4e-47	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A3Q7FR61	3e-64	A0A3Q7FR61_SOLLC; Uncharacterized protein
STRING	Solyc03g115910.1.1	1e-64	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7640	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-49	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]