PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g035000.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Nin-like
Protein Properties Length: 236aa    MW: 27291.2 Da    PI: 5.5142
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g035000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK795e-2569117452
            RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        +s + +skyF++pi+ AAkeL+++lT+LK++CR +GI+RWPhRk+ sl
  Sopen03g035000.1  69 MLSRDAISKYFYMPITRAAKELNIGLTLLKKRCRDLGIRRWPHRKLMSL 117
                       588999****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.08652138IPR003035RWP-RK domain
PfamPF020421.0E-2070117IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGAGELCYDE IGNEVRMLNE MSGELVGNRN QQVLFCDNIN QQEIVANEEI IATEKEKDNI  60
REEINSSRML SRDAISKYFY MPITRAAKEL NIGLTLLKKR CRDLGIRRWP HRKLMSLQTL  120
IKNVKELEKV GGNGMEQKLK DVIKLLEKEK NKMEEIPDME LEEKTKRLRQ ACFKANYKRR  180
RLLCMPELHA SFGSYCSTTP SVDDNVAIGD QHEEDDEEIK SLLADCFSYN SPTLHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177181KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771446.11e-175protein RKD2-like
TrEMBLA0A3Q7FR771e-118A0A3Q7FR77_SOLLC; Uncharacterized protein
STRINGSolyc03g116010.1.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42742142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.19e-49RWP-RK domain-containing protein