PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g035980.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 227aa    MW: 25010.5 Da    PI: 9.7652
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g035980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000175880123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C + F ++  L  H++ H
  Sopen03g035980.1 58 FSCNYCQRKFYSSQALGGHQNAH 80
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-65585No hitNo description
PROSITE profilePS5015711.4275885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEVQSSNSNQ ISNDEHENND LILDLRLDHG VKSNIQTSSS DASRSAGNNN TESEPRVFSC  60
NYCQRKFYSS QALGGHQNAH KRERTIAKRS QKISAAAFGY DNKYSSMASL PLHGSFNRSL  120
GIQVHSMIHK TTTSTAFGAP ALYGHPGWSI RRPIEQQPAI GRLGTESNFT NNYQTAATSS  180
GGAAARFDNI IQKFPQIDGI SQYRWDSGGG RTNKPDETKK LDLSLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069178.11e-170zinc finger protein 3
TrEMBLA0A3Q7FT101e-155A0A3Q7FT10_SOLLC; Uncharacterized protein
STRINGSolyc03g117070.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-42zinc finger protein 3