PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g038360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 247aa    MW: 26836.4 Da    PI: 6.8752
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g038360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.51e-284107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g+++++++ l+
  Sopen03g038360.1   4 SCNGCRVLRKGCNEKCSIKPCLqwiqsPEAQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGNWPLC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallke 99 
                       q+++e++l ++
  Sopen03g038360.1  97 QAAVEAVLNGA 107
                       *****998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2283109IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNEKCS IKPCLQWIQS PEAQSNATLF LAKFYGRAGL LNLINSGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWPLCQAAV EAVLNGAPIV KLSPDSAADA  120
TSPSLKACDI RHVSRENISD PDLHKVKSRT RFKRVSAKPE PRKQSPDVDD AARVMWSWCH  180
KEEEEAVGSP SLNSGLSQQR TEEPSREGES GDVDSGSVET VEALPAKLDE SDVGLELTLG  240
LLPLIRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132140.0BT013214.1 Lycopersicon esculentum clone 134425F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068018.10.0LOB domain-containing protein 41-like
SwissprotQ9M8865e-77LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3Q7FWA61e-176A0A3Q7FWA6_SOLLC; Uncharacterized protein
STRINGSolyc03g119530.2.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-72LOB domain-containing protein 41