PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g038370.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 407aa    MW: 46750.9 Da    PI: 5.0536
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g038370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.67e-101659340
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      +r C+ + +k++++fC  ++ +lC++C +++H+       H++v
  Sopen03g038370.1 16 ARACDSCLSKRARWFCPADDAFLCQSCDVSIHSAnqlasrHERV 59
                      578*****************************667888888876 PP
2CCT65.81.2e-22348391144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrF k++
  Sopen03g038370.1 348 REARVSRYREKRRNRLFSKKIRYEVRKLNAEKRPRLKGRFIKRS 391
                       9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-121461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8791461IPR000315B-box-type zinc finger
PfamPF006438.3E-81659IPR000315B-box-type zinc finger
CDDcd000211.19E-111761No hitNo description
PfamPF062031.5E-17348390IPR010402CCT domain
PROSITE profilePS5101715.934348390IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTSESKTANA IGGKTARACD SCLSKRARWF CPADDAFLCQ SCDVSIHSAN QLASRHERVR  60
LETYSNKSTI TKLVDKTHQP SWHQGFTRKA RTPRNGKKAQ IRQWKKNEEN RVPEIGSEEN  120
SLDENEFENE EQLLYRVPIF DPFEAELCNV PDETGSIVDL DILLNTEDTC HDLNLPEFLS  180
SDIELAEFAA DVETLLGGEE EQSTQLLNAD FENNKAIKIE VEDEEMRTVV ACHLDPELDM  240
EREALNWNFD EYYEETVEQK VMAADAAVTE FIASAEEYSG SSTKSDEKNR LFLRLNHEAV  300
ISAWPNQSSP WTNGIRPHFN PDDYWPEFFS ETSVGNYGGH VRSGDGGREA RVSRYREKRR  360
NRLFSKKIRY EVRKLNAEKR PRLKGRFIKR SSSSFSVPGF SYMMNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358374RRNRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070670.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A3Q7FT330.0A0A3Q7FT33_SOLLC; Uncharacterized protein
STRINGSolyc03g119540.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-88B-box type zinc finger protein with CCT domain