PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g040050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 375aa    MW: 41820.9 Da    PI: 5.3045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g040050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-08288328954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Sopen03g040050.1 288 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 328
                       69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-14284340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-12287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5288328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-4301333No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MENLDWNETP FNFGSSFDPI HVISNWNMPQ RQQAASRLAA DSMAAKAGAA DLTRDCTDIA  60
FSSSPILNMP NNYISDNSPL GLMSDFGVEI VKPISNTVSL ESIDCLLSAT TTNNTDTSIE  120
DDGMSVIFAD SNSLWNSGES AGINPQLLTC LSTDHKILEE EQNQRKRKSY ELDEAVSQSS  180
NEFNLFQSNS LGDCGNFQLI SEKQSKSKKM RLIERSNKRP SSSNINFQQA SSSVSSIDQE  240
PDPEAIAQMK EMIYRAAAFR PVDFGAEVLE KPKRKNVKIS TDPQTVAARQ RRERISERIR  300
VLQRLVPGGS KMDTASMLDE AANYLKFLRS QVKALEAIGQ KQDPFTSITQ FNYPIPMQLP  360
HFPLQNPNQI HRPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168QRKRKS
2288293RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068193.10.0transcription factor bHLH87
SwissprotQ8S3D21e-79BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A3Q7FX640.0A0A3Q7FX64_SOLLC; Uncharacterized protein
STRINGSolyc03g121240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]