PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g040660.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 335aa    MW: 37206.2 Da    PI: 6.7883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g040660.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11555146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                      + +WT eE++ l+ +v+++G+g+Wk I r         +R+  ++k++w++
  Sopen03g040660.1  5 KVKWTSEEEDALKAGVTKHGSGRWKNIIRDPEfapilINRSNIDLKDKWRN 55
                      579***************************99999*999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.207161IPR017930Myb domain
SuperFamilySSF466894.52E-15259IPR009057Homeodomain-like
SMARTSM007174.8E-7459IPR001005SANT/Myb domain
PfamPF002491.2E-7555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-13557IPR009057Homeodomain-like
CDDcd116603.18E-19657No hitNo description
SuperFamilySSF467853.75E-14112184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.7E-15112177IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.182114182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.7E-13114183IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd000731.74E-10116174No hitNo description
PfamPF005382.3E-10116175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGNPKVKWTS EEEDALKAGV TKHGSGRWKN IIRDPEFAPI LINRSNIDLK DKWRNMCIYT  60
AGQGSKDKSI VVRTRPMEID AFVPSPIQSL PPITSAFENE AIEDSPDVQP EGVNAPKYND  120
MIFEALSSMG DSNGSDLGAI VGFIEQRHEV QPNFRRTLSS KLRRLVAQGK LEKVQKCYKM  180
KDATSETNIS TPKQNDVRSW PVPISVPRQS DVLSWPVPNS APKQNDVLSW TVPNSAPKQN  240
DVRSRPVPNM ASKQNDVRSW QVPTSAVKVS SGTAEEAARI AADIVADAEN KRCLEVAAVR  300
DAEMKLRMVD DAESMLQIIK EIYEHCSQGE IILLA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070484.10.0single myb histone 4
TrEMBLA0A3Q7FUA40.0A0A3Q7FUA4_SOLLC; Uncharacterized protein
STRINGSolyc03g121840.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-56MYB_related family protein