PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g040760.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YA
Protein Properties Length: 286aa    MW: 32138.7 Da    PI: 9.7005
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g040760.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.1e-32133189158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       dep++VNaKQyq+Il+RRq Ra+le+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF
  Sopen03g040760.1 133 DEPIFVNAKQYQAILRRRQYRARLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 189
                       79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-33131192IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.838132192IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.7E-27134189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22135157IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22166189IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQQMSTFPGP QNTKELNHHF QDQDSSSTQS TSQSCPEAPN ERETKIHGKN NISLRAGSVR  60
SSGKSDDSQS VSSQEHGWTF DTYQKNFAVV PFPHPDPYYH DLVAAYGNQT MVQSQMLGMV  120
APRVPLPLDL KQDEPIFVNA KQYQAILRRR QYRARLEAQN KLSKGRKPYL HESRHRHALN  180
RARGPGGRFV NMKKPGESKS PDLINGQDNQ IPDELQLNTK MLERGVHQSG SHSTPFYSGI  240
TSGSKGDAIY HHQLFNYSAF SAHNVGASQL DKEKKDNMSN PCLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20133203269NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067836.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015067837.10.0nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLA0A3Q7FUC80.0A0A3Q7FUC8_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000063581e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139661114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-40nuclear factor Y, subunit A3