PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g001180.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 191aa MW: 22351.7 Da PI: 6.2468

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g001180.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.1	1e-14	81	140	5	64
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 +++rr+++NRe+ArrsR RK+ ++eL v L +eN+ L+++l++ ++ +++ +e++ Sopen04g001180.1 81 RKQRRMISNRESARRSRMRKQRHLDELWSQVVRLRTENHNLINKLNQVSESHEQVVQENM 140 79************************************************9999998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-16	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.208	79	142	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-12	81	140	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-12	81	135	No hit	No description
SuperFamily	SSF57959	8.44E-13	81	131	No hit	No description
CDD	cd14702	3.28E-19	82	132	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MISSEAATIH YLAQENPSSL PIDYTFMHKN FQFNNTFLTN NYQSFTFPIQ DLISTQPASC 60 ISSNSTSDES EEQQHRIIDE RKQRRMISNR ESARRSRMRK QRHLDELWSQ VVRLRTENHN 120 LINKLNQVSE SHEQVVQENM QLKDEAYDLR RLLVDIQVAT PFNGFSNIDD NVPSSLKTES 180 SNQSTTERKL E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073036.1	1e-139	basic leucine zipper 43
TrEMBL	A0A3Q7FUZ0	1e-135	A0A3Q7FUZ0_SOLLC; Uncharacterized protein
STRING	Solyc04g005170.1.1	1e-135	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	5e-48	basic leucine-zipper 42