PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g001860.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 257aa    MW: 30160.6 Da    PI: 6.1868
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g001860.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-174194356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      k++++ ++q+e Le+ Fe ++++  e++ +LAk++gL+ rqV +WFqNrRa+ k
  Sopen04g001860.1 41 KKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCK 94
                      45577899********************************************99 PP
2HD-ZIP_I/II121.15.7e-3940131192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl  +qv+ LE+sFe e+kLeperKv+la+e glqprqva+WFqnrRAR ktkqlEkdy++Lk+++d+lk++ + L ke+ +Lr+e++
  Sopen04g001860.1  40 EKKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCKTKQLEKDYDVLKASFDKLKTQYDCLFKENGSLRNEVH 131
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-182598IPR009057Homeodomain-like
PROSITE profilePS5007116.6493696IPR001356Homeobox domain
SMARTSM003896.3E-1839100IPR001356Homeobox domain
PfamPF000467.6E-154194IPR001356Homeobox domain
CDDcd000862.69E-154197No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1944103IPR009057Homeodomain-like
PRINTSPR000312.9E-56776IPR000047Helix-turn-helix motif
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PRINTSPR000312.9E-57692IPR000047Helix-turn-helix motif
PfamPF021839.0E-1896137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVNFDQDRVQ KSKKRSFLAQ LDQDDSSSND DNYNYHHQSE KKRRLLPKQV EYLEKSFEVE  60
NKLEPERKVQ LAKETGLQPR QVAIWFQNRR ARCKTKQLEK DYDVLKASFD KLKTQYDCLF  120
KENGSLRNEV HLLKEKLINR VKGKEILEFI SPLDHVEPQN PSIGVDSSLA MVKCKQEDAK  180
SDVLDSDSPR FTDGDYTSYL KPADSSNVFQ TEHSDFSREN DTLCFPKLEE HHHHDDLPVN  240
SCNLGFQIED QSWFSHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARCKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340424.10.0homeobox-leucine zipper protein HZ24
TrEMBLA0A3Q7FVA80.0A0A3Q7FVA8_SOLLC; Uncharacterized protein
STRINGSolyc04g005800.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-42homeobox 1