PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g002270.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 419aa    MW: 47964.4 Da    PI: 4.9847
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g002270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.67.1e-10649340
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      +r C+++ +k+++++C  ++ +lC++C ++ H+       H++v
  Sopen04g002270.1  6 ARACDNCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 49
                      578*****************************667888888876 PP
2CCT691.2e-23364407144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Sopen04g002270.1 364 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 407
                       9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.035451IPR000315B-box-type zinc finger
SMARTSM003364.8E-11451IPR000315B-box-type zinc finger
PfamPF006433.1E-8649IPR000315B-box-type zinc finger
CDDcd000219.03E-11751No hitNo description
PfamPF062033.9E-18364406IPR010402CCT domain
PROSITE profilePS5101716.003364406IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGAKTARACD NCIRKRARWY CAADDAFLCQ SCDSSVHSAN PLARRHERVR LKTSSFKSSD  60
DFPNLENTVS RLGSESGSGS DSIPSWHCGF TRKARTPRYG NKHAKRVKST EEEEEEEEMK  120
NPIQLVVPEI LSDENSHDEN EEEQLLYRVP IFDPFMADGS NYGNEYSSNK VDFNQDMNTF  180
QGLLAPSEME LAEFAADVES LLGKGLDDEE SFNYMEGLGF LEKHDEKLVK VEDEGEMGFV  240
NMISTNNQVD YSEFDMVGET FELKFDYDSQ VINNLDEDNK KVEFMEINYD SGKNNNNKIM  300
LNLDYESVLK SWADKRSPWT TGVQPQVDFN DCWPVCMGNC GKIHSYGDIT IMNGHGGGGV  360
DEGREARVLR YKEKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRTNFA PTPFPSLNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374390RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074262.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A3Q7FVI40.0A0A3Q7FVI4_SOLLC; Uncharacterized protein
STRINGSolyc04g007210.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-84B-box type zinc finger protein with CCT domain