PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g002500.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 123aa MW: 13624.8 Da PI: 8.7505

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g002500.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.3e-05	4	31	23	55
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L +l+P++ K + a++L +A+++I+ Lq Sopen04g002500.1 4 LETLIPNC-----NKSDRASVLDQAIQHIQALQ 31 88999998.....699****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.30E-5	1	35	No hit	No description
PROSITE profile	PS50888	10.15	1	30	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	2	41	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-9	2	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MKVLETLIPN CNKSDRASVL DQAIQHIQAL QHQIQVMSMD RIRASTLVAA GRNQIMQSTL 60 HFNPYIGAIG YFFNFSNFSP MLSTGSEFPF LPLSVACNLL HPGPIMEAFT RGYASVAPPE 120 KRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-148	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006360439.2	9e-71	PREDICTED: transcription factor bHLH119-like isoform X1
Refseq	XP_015170292.1	2e-71	PREDICTED: transcription factor PIF5-like isoform X4
TrEMBL	A0A3Q7FXK2	3e-76	A0A3Q7FXK2_SOLLC; Uncharacterized protein
STRING	Solyc04g007430.1.1	2e-79	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15248	8	8