PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g003200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 652aa    MW: 71231.2 Da    PI: 6.7699
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g003200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.87.9e-26211267155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ...kYRl 55 
                       kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ   k+Rl
  Sopen04g003200.1 211 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQenqKFRL 267
                       79*******************.****************************73337776 PP
2Response_reg76.78.7e-26281361109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+ + +++++q+l++ +y +v++++++  al+ll+ek+  +D++l D+ mp+mdG++ll+     e++lp+i++++ g  +++ + ++
  Sopen04g003200.1  28 VLVVDDDVVCLRIIEQMLRRCKY-SVTTCTQAMVALNLLREKRgtFDIVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTNLVMRGVQ 118
                       89*********************.***************999999*******************87754.558******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+  eel +
  Sopen04g003200.1 119 HGACDYLIKPIRDEELKN 136
                       ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.4E-1578635IPR017053Response regulator B-type, plant
SuperFamilySSF521724.7E-3525149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.5E-4125149No hitNo description
SMARTSM004482.8E-2926138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.29227142IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.0E-2328136IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.30E-2240141No hitNo description
PROSITE profilePS5129411.319208267IPR017930Myb domain
SuperFamilySSF466891.27E-16208271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-27209272IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-22211261IPR006447Myb domain, plants
PfamPF002493.0E-6213261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVSMSGDVAT CKSEATVVTD HFPVGLRVLV VDDDVVCLRI IEQMLRRCKY SVTTCTQAMV  60
ALNLLREKRG TFDIVLSDVH MPDMDGFKLL ELVGLEMDLP VIMMSGDGRT NLVMRGVQHG  120
ACDYLIKPIR DEELKNIWQH VVRKRYNSSK EPECSGSLDD NDRYRRGSDD AECASSVIEG  180
ADGVLKPQKK KREAKEDDTE MENDDPSTTK KPRVVWSVEL HQQFVSAVNQ LGIDKAVPKR  240
ILELMNVPGL TRENVASHLQ ENQKFRLYLK RLSGVVQQQG GLPSTFCGPI EQNSELGSLG  300
RFDIQALAAS GQIPPETLTA LHAELLGRST SNLVLPAVEQ QNLVQVSLQQ AKCIPVDQVM  360
AYGQPLLKCP ASISNSKHLS QAILSAEDVH SGFGSQRAKN ICMVPSSNPI APNSNMLMAM  420
MQQQQWQKQQ KIELQHRQPG PPEVNRSINV QPSCLVLPSQ LPGNFQVGDS PASISRAGSL  480
SKSSVIDYGV LSPQSNNSSG VVQVLDRELK PECGLNRLPS GGSLSRSCSI NADNSVGLQL  540
HNSSSAFGSS KQLPGLIPSH LGSPVPYCIN SSQVLDQGRM RNPGVSKGAS IPSRFAVDES  600
DSPMCNFSTA KIYLEETKVK QEPNMNVMEN AKVGPAIFQK FQPGDLMSVF SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-20207273164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073981.10.0two-component response regulator ARR14 isoform X1
SwissprotA2XE311e-143ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-143ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLM1CVX00.0M1CVX0_SOLTU; Two-component response regulator
STRINGSolyc04g008050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-106response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]