PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g003200.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 649aa    MW: 70859.9 Da    PI: 6.9123
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g003200.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.9e-28211264155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Sopen04g003200.2 211 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 264
                       79*******************.********************************8 PP
2Response_reg76.78.6e-26281361109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+ + +++++q+l++ +y +v++++++  al+ll+ek+  +D++l D+ mp+mdG++ll+     e++lp+i++++ g  +++ + ++
  Sopen04g003200.2  28 VLVVDDDVVCLRIIEQMLRRCKY-SVTTCTQAMVALNLLREKRgtFDIVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTNLVMRGVQ 118
                       89*********************.***************999999*******************87754.558******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+  eel +
  Sopen04g003200.2 119 HGACDYLIKPIRDEELKN 136
                       ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-1608632IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23009.0E-4125149No hitNo description
SuperFamilySSF521724.7E-3525149IPR011006CheY-like superfamily
SMARTSM004482.8E-2926138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.29227142IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.0E-2328136IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.28E-2240141No hitNo description
SuperFamilySSF466891.4E-19208268IPR009057Homeodomain-like
PROSITE profilePS5129410.655208267IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29209269IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24211264IPR006447Myb domain, plants
PfamPF002499.3E-7213262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MVSMSGDVAT CKSEATVVTD HFPVGLRVLV VDDDVVCLRI IEQMLRRCKY SVTTCTQAMV  60
ALNLLREKRG TFDIVLSDVH MPDMDGFKLL ELVGLEMDLP VIMMSGDGRT NLVMRGVQHG  120
ACDYLIKPIR DEELKNIWQH VVRKRYNSSK EPECSGSLDD NDRYRRGSDD AECASSVIEG  180
ADGVLKPQKK KREAKEDDTE MENDDPSTTK KPRVVWSVEL HQQFVSAVNQ LGIDKAVPKR  240
ILELMNVPGL TRENVASHLQ KFRLYLKRLS GVVQQQGGLP STFCGPIEQN SELGSLGRFD  300
IQALAASGQI PPETLTALHA ELLGRSTSNL VLPAVEQQNL VQVSLQQAKC IPVDQVMAYG  360
QPLLKCPASI SNSKHLSQAI LSAEDVHSGF GSQRAKNICM VPSSNPIAPN SNMLMAMMQQ  420
QQWQKQQKIE LQHRQPGPPE VNRSINVQPS CLVLPSQLPG NFQVGDSPAS ISRAGSLSKS  480
SVIDYGVLSP QSNNSSGVVQ VLDRELKPEC GLNRLPSGGS LSRSCSINAD NSVGLQLHNS  540
SSAFGSSKQL PGLIPSHLGS PVPYCINSSQ VLDQGRMRNP GVSKGASIPS RFAVDESDSP  600
MCNFSTAKIY LEETKVKQEP NMNVMENAKV GPAIFQKFQP GDLMSVFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22207270164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073982.10.0two-component response regulator ARR14 isoform X2
SwissprotA2XE311e-145ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLM1CVX10.0M1CVX1_SOLTU; Two-component response regulator
STRINGSolyc04g008050.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-108response regulator 2