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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sopen04g003530.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
BBR-BPC |
| Protein Properties |
Length: 281aa MW: 31025.6 Da PI: 10.1707 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen04g003530.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 337 | 4.9e-103 | 1 | 281 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernkalverdnk 80
mdddg + rn+gyyep+ lk +lglqlmss+ +rdak+ r +n + + ++++++rd +++ rd+++++ ++k
Sopen04g003530.1 1 MDDDGLNMRNWGYYEPS--LKGHLGLQLMSSMVDRDAKPyltRRENPIMLGANGVFHSRDsiipeaplshIDY-VRDSWINH--------RDK 82
9*****99*******99..**********************9777888*******************999999.99****99........789 PP
GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173
+l++ + +++++vl++++ +q++++p+++++ + +e+++++ke+ +k++ +++pk++kakk kk s++
Sopen04g003530.1 83 FLHMFPG--------SPYTSVLPDASASTPMQMVQQPDTTKDV----------GVN-VEEPSVKKESGPSKRKTGGATPKAPKAKKSKKVSSA 156
9999993........4678899999999999994443332221..........122.334566677777777788899***********9999 PP
GAGA_bind 174 skkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
+k++ ++++ r+k kks+d+vlng+++D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafk
Sopen04g003530.1 157 PKENGNPSQ---RAKPAKKSMDIVLNGIDMDISVIPIPVCSCTGSPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFK 246
977777666...89******************************************************************************* PP
GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
k+LekLaaeGy+++np+DL++hWAkHGtnkfvtir
Sopen04g003530.1 247 KVLEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 281
**********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MDDDGLNMRN WGYYEPSLKG HLGLQLMSSM VDRDAKPYLT RRENPIMLGA NGVFHSRDSI 60
IPEAPLSHID YVRDSWINHR DKFLHMFPGS PYTSVLPDAS ASTPMQMVQQ PDTTKDVGVN 120
VEEPSVKKES GPSKRKTGGA TPKAPKAKKS KKVSSAPKEN GNPSQRAKPA KKSMDIVLNG 180
IDMDISVIPI PVCSCTGSPQ QCYRWGCGGW QSACCTTSIS MYPLPMSTKR RGARIAGRKM 240
SQGAFKKVLE KLAAEGYNFA NPIDLRTHWA KHGTNKFVTI R
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
