PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g003630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 306aa    MW: 35004.2 Da    PI: 8.4699
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g003630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.18.4e-331972255
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      prlrWtp+LH++Fv+a+e+LGG++kAtPk +l++m+v gLt++hvkSHLQ+YR+
  Sopen04g003630.1 19 PRLRWTPDLHHCFVHAIEKLGGQDKATPKLVLQMMDVRGLTISHVKSHLQMYRS 72
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7581575IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-311575IPR009057Homeodomain-like
SuperFamilySSF466891.67E-151774IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-241973IPR006447Myb domain, plants
PfamPF002496.3E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QDKATPKLVL QMMDVRGLTI  60
SHVKSHLQMY RSMKSDVNKQ GERMSIQPSK EVCLGDLDCH YQQQEQGDEG CVEQQKLLVY  120
QYPLSFSSNP NMKRTDSTPY FNSVQPTKRA RIERCSSQRI REAVSNEYNS RNDYIIHSIM  180
ATEKNETTQP LCNSTTHIFN PLTTSNELQE SLFFKVLKTQ DSNRDSSKRF KFEDSMKIDN  240
VREDDDERGL SLSLSLHRPT TQRSNASSII SEISETISSY SGGLNLNDWR SSSEKQNVNL  300
NLSIAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-154HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072961.10.0putative Myb family transcription factor At1g14600
TrEMBLA0A3Q7GPB20.0A0A3Q7GPB2_SOLLC; Uncharacterized protein
STRINGSolyc04g008480.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54332238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-34G2-like family protein