PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g004310.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 251aa MW: 26590.9 Da PI: 10.3875

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g004310.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.3	1.1e-37	35	124	2	92
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s++ s ++ + Sopen04g004310.2 35 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSVRNSTA--SLVSSLS 124 689******************************************************************87732222222222..2222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.613	41	95	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.8E-34	42	132	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSTSAEGNGA IIDSQRQQQQ QQQAPTGVGT NGALTVKKPP VKDRHSKVDG RGRRIRMPIV 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT IPASFSTVSV SVRNSTASLV 120 SSLSAPLDQK SSQMISPAPF ILGKRLRSDD ENIENGNKDD VAVAAGAATA VGPTAGFWAV 180 PARPDFGQIW SFAAAPPPEM MSSRFFQQQM GEASAARVGN YLPMTQGHLN LLASLSGPPQ 240 PSSGRRDDDG R

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001293140.1	1e-164	TCP transcription factor 14
Swissprot	Q9FMX2	3e-85	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV4	1e-162	G3BGV4_SOLLC; TCP transcription factor 14
STRING	Solyc04g009180.1.1	1e-163	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-84	TCP family protein