PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g004680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 166aa    MW: 18073.1 Da    PI: 4.8665
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g004680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.33.5e-5627124198
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdr+lPian++rimkk lPanaki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddl+w+l+tlGfedy+eplk+yl +yre+
  Sopen04g004680.1  27 VREQDRYLPIANIGRIMKKGLPANAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLVWSLTTLGFEDYIEPLKAYLIRYREM 119
                       69******************************************************************************************* PP

             NF-YB  94 egekk 98 
                       eg++k
  Sopen04g004680.1 120 EGDTK 124
                       **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-5224133IPR009072Histone-fold
SuperFamilySSF471134.97E-3930132IPR009072Histone-fold
PfamPF008081.9E-263396IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-196179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-198098No hitNo description
PRINTSPR006151.6E-1999117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAEVPASPGG GCGSHESGGE RSPQSNVREQ DRYLPIANIG RIMKKGLPAN AKIAKEAKDT  60
VQECVSEFIS FITSEASDKC QKEKRKTING DDLVWSLTTL GFEDYIEPLK AYLIRYREME  120
GDTKGSSRAG DTSARNDIVG GQLSPGTQFV YDGSFSQGFD YGNSQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4627118192Transcription factor HapC (Eurofung)
4g92_B6e-4627118192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-122HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074252.11e-121nuclear transcription factor Y subunit B-10-like
RefseqXP_027772469.11e-121nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK41e-77NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0V0HI521e-119A0A0V0HI52_SOLCH; Putative ovule protein
STRINGXP_009771322.17e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-73nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]