PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g005820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 670aa    MW: 75365.9 Da    PI: 9.6395
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g005820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07547596147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Sopen04g005820.1 547 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFeyaDHRTYVDVKDKWKTL 596
                       6789999*******************9988889999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.56E-8350435IPR029071Ubiquitin-related domain
PROSITE profilePS500539.613354424IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.904.3E-4357424No hitNo description
CDDcd017690.00792358424No hitNo description
PROSITE profilePS5129416.891542601IPR017930Myb domain
SMARTSM007172.2E-7546599IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-9547597IPR009057Homeodomain-like
CDDcd116602.10E-14548598No hitNo description
SuperFamilySSF466892.32E-15548629IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MSSKKRVRHG FSGFEFPVIP KAPRSVRRRH SHKNINNDQI CAFELLATVA GELLQESESS  60
ACSNAVIEKD KLSDCREVVK REQLKEDKAV KSECFDQGSC VESAHLPEPA VQEPNLKYSL  120
DKPNHIENNI FRTEVEGASS NLEDVCDKRT DTGTQKQLTD DGKQTEDLTL ANSSSVKGPI  180
EKRVNNNSAI NSDSSVQLPW YRAVPRPSFG KQRNNVKLGI RDDDENSFGS YRHNTNIRAF  240
RQTSRNGYKS MRKMLTNRRW KVAPQLKDWE RSCSKYGMKS FHRNRKRVCA LERCRFEIPS  300
KRRKLCHYSS VVAYDQQANS KSISNSPEKG IKRDITGAGD SASVRNHRKK DSNVKFSIKS  360
FKVPELFIEV PENETVGSLK RTVMEAVKSI LGSGLRVGMV VQGKKVRDDN KTLQQAGISQ  420
NGNLDTLGFT LEPSSYPVSP SLHSKDLPAL SPYVADHELT RRPPSPIMEL ELPSFSSALS  480
ETRLDEHDKD YHELALSPKN PIDPPSDVAI SDSRALVVLS PLNAEAHPVV PVNPKNRCSE  540
HSQRRTRRPF SVAEVEALVE AVEQLGTGRW RDVKIRAFEY ADHRTYVDVK DKWKTLVHTA  600
SIAPQQRRGE PVPQELLDRV LVAHDYWSKQ HGKNQAEPAK MTEAQMLHVG TLENSNDSNS  660
MPSKMVGSAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-585316511121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284303RKRVCALERCRFEIPSKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071549.10.0telomere repeat-binding protein 4-like
TrEMBLM1A7D50.0M1A7D5_SOLTU; Uncharacterized protein
STRINGSolyc04g011650.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-105TRF-like 2