PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g006480.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 222aa    MW: 24915.4 Da    PI: 8.1222
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g006480.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-131157354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      ++h+e+ErrRR+riN  +++Lr llP+       K +Ka+ L +Av+++++L
  Sopen04g006480.1 11 KSHSEAERRRRKRINGHLATLRNLLPNT-----IKTDKASLLAEAVRCVREL 57
                      79*************************8.....6**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.307857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.05E-101159No hitNo description
Gene3DG3DSA:4.10.280.108.5E-141167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-101157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-141268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-121463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.7E-5125172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAEAKAIAAN KSHSEAERRR RKRINGHLAT LRNLLPNTIK TDKASLLAEA VRCVRELKQT  60
TSELGATTTT TTMSENDDDD DHTTLMRKIM FPSESDELNL SYCNESNNNN TDNNNDDRNL  120
IIKASMCCED RPEIMMELRR ALSTVEGKIV RAEMSTVGGR IKCILWLEML ENGCKEGLFV  180
QLRRALKVVM DKANFGPQNM GQDLLGNNKR PRLLGGPINY AS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072294.11e-163transcription factor bHLH30-like
TrEMBLA0A3Q7G1551e-160A0A3Q7G155_SOLLC; Uncharacterized protein
STRINGSolyc04g014360.2.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-32bHLH family protein