PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g008020.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 203aa    MW: 23835.2 Da    PI: 9.696
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g008020.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.3e-322869102
                       HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
      HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                       ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF++++Fkkg+k+ll++i+r+k
  Sopen04g008020.1   2 LVEDPATDDVVSWNSDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTSR---------WEFSNDKFKKGEKNLLREIRRRK 85 
                       799*******************************************************999.........*********************98 PP

                       X CS
      HSF_DNA-bind 102 s 102
                        
  Sopen04g008020.1  86 A 86 
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-29284IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-41284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-32284IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-28284IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-93345IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403458IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-94658IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLVEDPATDD VVSWNSDGSA FVVWQPAEFA RDLLPTLFKH SNFSSFVRQL NTYGFRKITT  60
SRWEFSNDKF KKGEKNLLRE IRRRKAWTNR QQPNNKKDNI IEEDQRSSSS ASSSSEYINL  120
VDENKRLKME NGVLSSELLL MKNKCKELMN IVTIFAKNPE KEEDEKKPML FGVRLEVKEE  180
MERKRKRVEL NEMASVFLSQ LCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1828427120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072976.11e-147heat stress transcription factor B-3
SwissprotO222302e-56HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A3Q7GSI41e-143A0A3Q7GSI4_SOLLC; Uncharacterized protein
STRINGSolyc04g016000.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-54heat shock transcription factor B3