PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g009780.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 122aa    MW: 13793.3 Da    PI: 4.6568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g009780.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.7e-093685154
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae..eAakaaiaarkkle 54
                      s++kGV   + +grW A+I++      + r++lg+f  +e  e a+a++  ++++ 
  Sopen04g009780.1 36 SKFKGVVPQP-NGRWGAQIYEK-----HERIWLGTFNGEEeeEKARAYDITAQRFC 85
                      79****9888.8*********3.....5********99445588999999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-133694IPR016177DNA-binding domain
CDDcd000183.10E-243693No hitNo description
PROSITE profilePS5103215.0273794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-163794IPR001471AP2/ERF domain
SMARTSM003803.8E-2237100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MGSGVSVIID VDSPNGEETE SKNTTTTNNN NKLPSSKFKG VVPQPNGRWG AQIYEKHERI  60
WLGTFNGEEE EEKARAYDIT AQRFCGRDAV TNFKPLFDNQ IEEIEISFLN SRSKVEIVDI  120
LR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236999.13e-59AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ6L4H47e-45Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLE1U2K47e-58E1U2K4_SOLLC; RAV1
STRINGSolyc04g007000.1.11e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-45related to ABI3/VP1 1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]