PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g021690.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 146aa    MW: 16205.1 Da    PI: 4.9934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g021690.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-192271255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr++  +g+WvAeIr+p  ng  +r++lg+f t  eAa+a++ a+++l+g
  Sopen04g021690.1 22 TYRGVRQRT-WGKWVAEIREP--NG-GARIWLGTFNTSVEAARAYDDAARRLYG 71
                      69****999.**********9..33.5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-192181No hitNo description
PROSITE profilePS5103221.5492279IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-212279IPR016177DNA-binding domain
PfamPF008477.5E-142271IPR001471AP2/ERF domain
SMARTSM003803.8E-352285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-302280IPR001471AP2/ERF domain
PRINTSPR003671.1E-102334IPR001471AP2/ERF domain
PRINTSPR003671.1E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVGRSRKGCM RGKGGPENAL CTYRGVRQRT WGKWVAEIRE PNGGARIWLG TFNTSVEAAR  60
AYDDAARRLY GSDAKLNLSE QESTDVSIIE DGDGECSVLE EASIFKDGNG KYLVWDTPAP  120
SLLGVDFHGD ATTCFNWKNQ PELMYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-162378359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-162378662ATERF1
3gcc_A1e-162378662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073147.11e-106dehydration-responsive element-binding protein 2G-like
SwissprotP618275e-41DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A3Q7GW637e-90A0A3Q7GW63_SOLLC; Uncharacterized protein
STRINGSolyc04g050750.1.11e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]