PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g023900.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 370aa MW: 41748.6 Da PI: 5.3327

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g023900.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.7e-10	85	121	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+ Sopen04g023900.1 85 DKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 121 799**************************82444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.1E-7	81	129	No hit	No description
SMART	SM00338	1.2E-4	82	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.967	84	128	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-6	85	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.93E-6	86	127	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-29	174	247	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MNSSTYSQFV ASKRMGICDP IHQIGMWGDF RGSSFPDTLI LEVENCLENE MPIMEKRLEN 60 EIEEPSQVTV GTSNRYEPET TKRIDKVRRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL 120 QLEQELERNR QQGLYVGDGL DASQIGCSGT ANSGIASFEM EYGHWVEEQD RLTDDLRNAL 180 NSQMGEIELR ILVEGCLNHY FDLFRLKATA ANADVLYLMS GTWKTSAERF FLWIGGFRPS 240 ELLKVLTPHV EPLSDQQIQE VSNLTQSCQQ AEDALSQGMV KLHQILAEAV AAGTLGEGVI 300 LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILAPHQ SAQGLLALGE YFKRLRALSS 360 LWAGRLCEPA

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MNSSTYSQFV ASKRMGICDP IHQIGMWGDF RGSSFPDTLI LEVENCLENE MPIMEKRLEN  60
EIEEPSQVTV GTSNRYEPET TKRIDKVRRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL  120
QLEQELERNR QQGLYVGDGL DASQIGCSGT ANSGIASFEM EYGHWVEEQD RLTDDLRNAL  180
NSQMGEIELR ILVEGCLNHY FDLFRLKATA ANADVLYLMS GTWKTSAERF FLWIGGFRPS  240
ELLKVLTPHV EPLSDQQIQE VSNLTQSCQQ AEDALSQGMV KLHQILAEAV AAGTLGEGVI  300
LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILAPHQ SAQGLLALGE YFKRLRALSS  360
LWAGRLCEPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF387785	0.0	AF387785.1 Lycopersicon esculentum leucine-zipper transcription factor (NITF) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073551.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X1
Refseq	XP_027771827.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X1
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	Q94EX6	0.0	Q94EX6_SOLLC; Leucine-zipper transcription factor
STRING	Solyc04g054320.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-140	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]