PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g024370.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25492.7 Da    PI: 7.3058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g024370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-15858151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i ++++rqv fskRr+ +lKK +E+ + Cd++ + + fs+ ++l  ++s
  Sopen04g024370.1  8 KKIVDTTKRQVAFSKRRTCLLKKVKEIAICCDVDMLFVAFSPANRLSKFCS 58
                      67899*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.726160IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-16159IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-12222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-21387IPR002100Transcription factor, MADS-box
PfamPF003192.7E-15956IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-122237IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-123758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGRRIKIKKI VDTTKRQVAF SKRRTCLLKK VKEIAICCDV DMLFVAFSPA NRLSKFCSQN  60
RIKDMLQRYI ELPVERRLTH MADVQEKMEK LGQLNRIKGD ARKLQFLDKK SVSCTQLNNT  120
FQLGLENDNT TWNNNLNNSS SFGLENAHSN WNNNMSNNNN YINEYNDPPS VQSDAITPNV  180
NGFNYSMEEN TMGNIAESTT HENDACEWEV FLNEAFNGED F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-129HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772410.13e-54uncharacterized protein DDB_G0288805-like
RefseqXP_027774005.13e-56putative uncharacterized protein DDB_G0284715
TrEMBLA0A1S3Y2L52e-47A0A1S3Y2L5_TOBAC; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009630259.11e-48(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-21AGAMOUS-like 104