PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g024410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 419aa    MW: 47700.1 Da    PI: 7.6253
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g024410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF581.2e-18858151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ie++s+rqvtfskRr ++lKKA+E+ +  d++v+++ fs+ ++l  ++s
  Sopen04g024410.1  8 KKIEETSKRQVTFSKRRSTLLKKAKEIAISSDVDVLLVAFSPAQRLSKFCS 58
                      68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.465160IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-20159IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-14222IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-19361IPR002100Transcription factor, MADS-box
PfamPF003193.4E-17956IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-142237IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-143758IPR002100Transcription factor, MADS-box
PfamPF077271.6E-16332388IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRKIEIKKI EETSKRQVTF SKRRSTLLKK AKEIAISSDV DVLLVAFSPA QRLSKFCSKN  60
RDYEPGPEEE VPLHQLCLCE NNLQLSLQKI RDRKVELEKQ GNMDVHFTAQ QITHHQFNTN  120
NWINTYSPSI QGSMYQNRMD KGKRVANSSS HYTYTPSFAS SSQSGNIPFS QNQNSSPYIP  180
LQSYQLNTAV DVLQNPPPTF GQSQAQLTFD ESSNNSLMNF WKNIYASTRP VSSPLATMGT  240
HLNNPSESGL EYAYSNSSIN LSNNNNIIQQ NEHSLFQSDA ITPNIHGFNY PREVAEEVDT  300
SEPSTYKEAI LSSDSEKWFA AMGDEMESLH KNQTWDLVIQ PSGRKIITCK WVFKKKEGIS  360
PAEGVKYKAR VVARGFNQRE GVDYNEIYLK FRITNRAGRK ESKQAKTRAE EEEEDEYDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886284.11e-104floral homeotic protein APETALA 1 C-like
TrEMBLA0A3Q7G2B21e-101A0A3Q7G2B2_SOLLC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-12AGAMOUS-like 104