PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g025150.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 1091aa MW: 122123 Da PI: 5.7194

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g025150.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.3	1.1e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 l+ ++rwl++ ei++iL+n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+sw+kk+dgktv+E+he+LK g+++vl+cyYah+een++f Sopen04g025150.2 20 LEAQHRWLRPAEICEILKNYQKFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHSWRKKRDGKTVKEAHERLKAGSIDVLHCYYAHGEENENF 112 5679*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Leee+++ivlvhy+evk Sopen04g025150.2 113 QRRSYWMLEEEMSHIVLVHYREVK 136 *******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.727	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.8E-79	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.9E-50	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.2E-4	506	591	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	9.7E-5	507	585	IPR002909	IPT domain
SuperFamily	SSF81296	6.07E-16	507	593	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.5E-19	691	806	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	19.439	693	814	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.42E-14	693	801	No hit	No description
SuperFamily	SSF48403	7.46E-19	698	804	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.7E-9	715	805	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.011	743	772	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.259	743	775	IPR002110	Ankyrin repeat
SMART	SM00248	120	782	811	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.72E-6	914	967	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	48	916	938	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.126	918	946	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.11	918	937	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0042	939	961	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.285	940	964	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.9E-4	942	961	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1091 aa Download sequence Send to blast
MADSRRYGLN AQLDIEQILL EAQHRWLRPA EICEILKNYQ KFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHSWRKKRD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML 120 EEEMSHIVLV HYREVKGNRT NFSRIREPLQ VTPDLQETDE DVHSSEVDSS ASTKFYPNDY 180 QVNSQVTDTT SFSSAQASEY EDAESVYNQH PTSGFHSFLD AQPSAGDGLA VPYHPIPFSR 240 SSGTSFSSIP PGNGNTNTAN TYVPSRNLDF ASWGTISVNN PAAYQSLHFQ PSAQSSANNM 300 MHEQGNTTMG QLFSNDFTRQ EHENHIDGLG NWQTSEVDSS FISKWSMDQK LNPDLTSGQT 360 IGSSGVYGVE RHNSLEASQL LSAQQDKHPM QNELQSQLSD ANIGGSLNAD LDHNLSLGVK 420 TDYSALKQPL LDGVLKREGL KKLDSFDRWI SKELGDVSES HMQSNSSSYW DNVGDEDGVD 480 NSTIASQVQL DTYVLSPSLA QDQIFSIIDF SPNWAFSGSE IKVLITGRFL KSQQEVENCS 540 WACMFGELEV PAEVIADGVL RCHTPVQKAG RVPFYITCSN RLACSEVREF EFRVTEGQDV 600 DVANPNSCSS SESLLHMRFG KLLSLESFVS QTSPPISEDD VSHISSKINS LLRDDDNEWE 660 EMLHLTSENN FMAEKVKDQL LQKLLKEKLR VWLLQKVAEG GKGPNILDEG GQGVLHFAAA 720 LGYDWAVPPT IAAGVSVNFR DVNGWTALHW AASYGRERTV GFLISLGAAA GALTDPTPKH 780 PSGRTPADLA SSNGHKGIAG YLAESSLSSH LSSLELKEKK QGENEQAFGE AVQTVSERTA 840 TPAWDGDWSH GVSLKDSLAA VRNATQAAAR IHQVFRVQSF QRKQLKEYGG SEFGLSDERA 900 LSLLAMKTNR AGQHDEPHAA AVRIQNKFRS WKGRRDFLLI RQRIIKIQAH VRGHQVRNKY 960 KNIIWSVGIL EKVILRWRRK GSGLRGFKPE APTEGSNMQD QPVQEDDYDF LKEGRKQTEE 1020 RLQKALERVK SMVQYPEARD QYRRLLNVVS DMQEPNSTAA SYNSAEAVDF NDDLIDLGDL 1080 LDDDTFMPTA P

Sequence ? help Back to Top

Protein Sequence Length: 1091 aa Download sequence Send to blast

MADSRRYGLN AQLDIEQILL EAQHRWLRPA EICEILKNYQ KFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHSWRKKRD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEEMSHIVLV HYREVKGNRT NFSRIREPLQ VTPDLQETDE DVHSSEVDSS ASTKFYPNDY  180
QVNSQVTDTT SFSSAQASEY EDAESVYNQH PTSGFHSFLD AQPSAGDGLA VPYHPIPFSR  240
SSGTSFSSIP PGNGNTNTAN TYVPSRNLDF ASWGTISVNN PAAYQSLHFQ PSAQSSANNM  300
MHEQGNTTMG QLFSNDFTRQ EHENHIDGLG NWQTSEVDSS FISKWSMDQK LNPDLTSGQT  360
IGSSGVYGVE RHNSLEASQL LSAQQDKHPM QNELQSQLSD ANIGGSLNAD LDHNLSLGVK  420
TDYSALKQPL LDGVLKREGL KKLDSFDRWI SKELGDVSES HMQSNSSSYW DNVGDEDGVD  480
NSTIASQVQL DTYVLSPSLA QDQIFSIIDF SPNWAFSGSE IKVLITGRFL KSQQEVENCS  540
WACMFGELEV PAEVIADGVL RCHTPVQKAG RVPFYITCSN RLACSEVREF EFRVTEGQDV  600
DVANPNSCSS SESLLHMRFG KLLSLESFVS QTSPPISEDD VSHISSKINS LLRDDDNEWE  660
EMLHLTSENN FMAEKVKDQL LQKLLKEKLR VWLLQKVAEG GKGPNILDEG GQGVLHFAAA  720
LGYDWAVPPT IAAGVSVNFR DVNGWTALHW AASYGRERTV GFLISLGAAA GALTDPTPKH  780
PSGRTPADLA SSNGHKGIAG YLAESSLSSH LSSLELKEKK QGENEQAFGE AVQTVSERTA  840
TPAWDGDWSH GVSLKDSLAA VRNATQAAAR IHQVFRVQSF QRKQLKEYGG SEFGLSDERA  900
LSLLAMKTNR AGQHDEPHAA AVRIQNKFRS WKGRRDFLLI RQRIIKIQAH VRGHQVRNKY  960
KNIIWSVGIL EKVILRWRRK GSGLRGFKPE APTEGSNMQD QPVQEDDYDF LKEGRKQTEE  1020
RLQKALERVK SMVQYPEARD QYRRLLNVVS DMQEPNSTAA SYNSAEAVDF NDDLIDLGDL  1080
LDDDTFMPTA P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4hb5_A	4e-12	694	802	20	122	Engineered Protein
4hb5_B	4e-12	694	802	20	122	Engineered Protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU170838	0.0	GU170838.1 Solanum lycopersicum cultivar Rutgers calmodulin-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073473.1	0.0	calmodulin-binding transcription activator 3-like isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A3Q7G683	0.0	A0A3Q7G683_SOLLC; Uncharacterized protein
STRING	XP_009613615.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]