PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g025410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 564aa    MW: 62156.1 Da    PI: 6.9534
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g025410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.82.6e-09138198262
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       ++ kr  rk++N e+   sR+RKk ++eeLe+k+  +++  + L  +l+   +e a+lk++
  Sopen04g025410.1 138 EDEKRMARKIRNMESVHLSRKRKKHYVEELENKFRIFQSTIQHLNTKLSYALEENATLKAQ 198
                       67799******************************************99999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.5E-11135199No hitNo description
SMARTSM003384.5E-8137201IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.91139199IPR004827Basic-leucine zipper domain
PfamPF001707.9E-8140198IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-8141199No hitNo description
CDDcd147043.48E-12142193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MADPPPAEEA NFIGEFDGFA VQPLDRTFYA LHMTTTYQEN VEDFPMEFPN VNFTTDAIIL  60
DESFNDSFPN PISDDAFQNP NFLSDCVGSE SGLDSSEMNP KSFGQPKSQL IGSSDDDSRK  120
FNSTSGYCLG EAPVNKDEDE KRMARKIRNM ESVHLSRKRK KHYVEELENK FRIFQSTIQH  180
LNTKLSYALE ENATLKAQLG GTGVPSQVSP TPKINLYPPP WMSYTPYYMM NRQGSQVPLL  240
PIPKLKSQAL APAPKSNKKF EKKKIEVKTK KVASVSFLGM LFFILLFGGL IPLLKGRYGG  300
MSEPFMSGDS FLNRFNEKHL GRDGCSGKYG GKDHSSHCGQ GGQGESNEKN TNKAADEFVH  360
VGNASEKAMA FHENADKKNR EAGLAIPGDL SAAVPGIHPR LYRSPAMGQK IFGSKEKENV  420
KSTTQEWYLE GLAGPLLRSG MCTEVFKFDV SSSASDISME ENQNGTRLHR NRRTLNDLPA  480
SPSRPSHSIS EEQTGTNGKQ ENKSLSSMVV SVLVDGDGVI GPKSVSRIFV VVLIDSVKYV  540
TYSCMLPFKG SAPLVNAPED GAFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772588.10.0bZIP transcription factor 17-like
TrEMBLA0A3Q7G6140.0A0A3Q7G614_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000902490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30292450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.12e-60bZIP family protein