PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g025470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 223aa    MW: 26137.1 Da    PI: 8.0261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g025470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.6e-0866115154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +++ h  +Er RR+++ + +++Lr++lP      ++K s  +  ++Av+ Ik+L
  Sopen04g025470.1  66 KKVLHRDVERHRRQEMSNLYATLRSHLPYI----KGKRSLPDDMQEAVNQIKNL 115
                       6788************************96....47888888888888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-1063128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.56E-563120No hitNo description
PROSITE profilePS5088812.18965115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-667130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDCLSEIFSS KKIKDHDQQQ LIQIPSTPCQ PHHQDLPTND PNYKRKRSIS DHKERDSLTR  60
KNSVQKKVLH RDVERHRRQE MSNLYATLRS HLPYIKGKRS LPDDMQEAVN QIKNLENNIK  120
ELEIKRKKLE DLVLCSSKED KHFGDYVKIN LCDCGVEILI NERIPLSRVL EELVKRQLNV  180
VSCVSTKVDE RLLHRIQIEE SDVSCMCMDG LEQKLAEMIV FHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-174HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073213.11e-161transcription factor bHLH118-like
TrEMBLM1APG91e-132M1APG9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000272931e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.16e-28bHLH family protein