PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g025850.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 201aa    MW: 22474.2 Da    PI: 6.236
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g025850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68.1e-075374627
                      -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                      C+ f +tG C+ G++Ck +H++
  Sopen04g025850.1 53 CPVFEATGNCPKGSNCKLHHPK 74
                      *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.225124IPR000571Zinc finger, CCCH-type
SMARTSM003561.1123IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.1132546IPR000571Zinc finger, CCCH-type
SMARTSM003560.632551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6344775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-54972IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-45072IPR000571Zinc finger, CCCH-type
SMARTSM003560.565274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MQDCSYFLQG ICSNENCPYR HVNVNPNASI CEGFLRGYCA DGNECQKKHT YVCPVFEATG  60
NCPKGSNCKL HHPKNRRKGV KRKALSELKN GRGRYFGSPH IHITECITAG SEKPSVKGNN  120
DIFLEGKFVD FISLDGSDEE ELTIDQRSEE KPLCESGPAE MQLDDLDELI KPMRLINRNR  180
SVGSSPYIDS PSDMTTSYVS E
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772202.11e-138uncharacterized protein LOC107017622 isoform X1
RefseqXP_027772203.11e-138uncharacterized protein LOC107017622 isoform X2
RefseqXP_027772204.11e-138uncharacterized protein LOC107017622 isoform X3
SwissprotQ3ED783e-43C3H7_ARATH; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A3Q7GY411e-134A0A3Q7GY41_SOLLC; Uncharacterized protein
STRINGSolyc04g057990.2.11e-137(Solanum lycopersicum)
Publications ? help Back to Top
  1. Hématy K, et al.
    The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.
    PLoS Genet., 2016. 12(2): p. e1005817
    [PMID:26828932]