PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g026790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 255aa    MW: 28786 Da    PI: 9.7467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g026790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-1614102198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       ffkv+     + s  l++p  f+ + +g+k e+ t++   +   +W+v++  +++ ++ + + kGW+eFv+ ++L++gDf vF++ g+++f  
  Sopen04g026790.1  14 FFKVM--VPGFHS-KLTIPPAFFPKLKGDKSEKGTII---KGKDTWNVEI--NRSEKGiISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRF-- 96 
                       77888..445555.59**********77877766777...6779******..888888899*************************99999.. PP

                       EEEEE- CS
                B3  93 vvkvfr 98 
                        v++++
  Sopen04g026790.1  97 SVTLLD 102
                       777666 PP
2B352.31.1e-161682431489
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         + +p +f++++ +   +++t+tl+ +sg+s  v l++++++++    +t+GW +F ++n+Lk+gD+++F+ld++++
  Sopen04g026790.1 168 PYMHIPTEFCQSNALF--QNTTMTLTGPSGKSCPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCLFQLDRSKS 243
                       4589*********877..6679***************9999988888889***********************98743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.23811104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1712106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-1512102No hitNo description
Gene3DG3DSA:2.40.330.101.2E-1912106IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-1214104IPR003340B3 DNA binding domain
PfamPF023621.0E-1214100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18152242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-17153241IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-6154247IPR003340B3 DNA binding domain
CDDcd100171.04E-15154243No hitNo description
PROSITE profilePS5086310.856155255IPR003340B3 DNA binding domain
PfamPF023623.2E-14169243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQSSSSELPI SRRFFKVMVP GFHSKLTIPP AFFPKLKGDK SEKGTIIKGK DTWNVEINRS  60
EKGIISFDKG WEEFVQNHDL RVGDFAVFEH LGDMRFSVTL LDSTGCDKKL LEKSEVVPSQ  120
EKKKKVNSAQ PGTEKRKVEG DQPHYQCMKG SSEFTARIKE YNVRKRSPYM HIPTEFCQSN  180
ALFQNTTMTL TGPSGKSCPV SLRICNGGKT LYACITRGWH DFFSSNKLKV GDVCLFQLDR  240
SKSDSNSIAI DVRVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-180HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072069.10.0B3 domain-containing protein REM9-like
TrEMBLA0A3Q7G7460.0A0A3Q7G746_SOLLC; Uncharacterized protein
STRINGSolyc04g064830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-25B3 family protein