PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g026820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 231aa    MW: 25685.1 Da    PI: 7.9235
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g026820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.6e-203079149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                      k+i n+  r+vtfskRr g++KKA+EL++L++ae+a+++ s ++++l+++
  Sopen04g026820.1 30 KPIANQNSRHVTFSKRRLGLFKKASELCILTGAEIAILVQSlKRQRLFTF 79
                      689************************************99567889888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-242282IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.0722270IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-2223110IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-102444IPR002100Transcription factor, MADS-box
PfamPF003191.8E-193279IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-104459IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MNINNNTNAA VNSAAVAVKK TQGRRKIAIK PIANQNSRHV TFSKRRLGLF KKASELCILT  60
GAEIAILVQS LKRQRLFTFG HPSADAVINR YLTGKSEEQK PAGDDQLNYV QQSNEYYSQI  120
CRELELEKKV KEEIFIDESK MVNGGSSNNG GGGFWWNESI DEMGIEELEK FMFALEELKK  180
KVNMRCDELS MINGSSSMAA AAASTSSMNQ AIDYCASVVP FDFNYPGNAQ F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072309.11e-172agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G7871e-130A0A3Q7G787_SOLLC; Uncharacterized protein
STRINGSolyc04g064860.1.11e-131(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27AGAMOUS-like 62