PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g026890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 259aa    MW: 29435 Da    PI: 4.4309
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g026890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.43.2e-381372362
            zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      e+a +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+
  Sopen04g026890.1 13 EQAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 72
                      67789***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-27265IPR003851Zinc finger, Dof-type
PfamPF027011.4E-321470IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6861670IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101854IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MIMMERTRKS NIEQAPNCPR CASTNTKFCY YNNYSLSQPR YFCKACRRYW TKGGSLRNVP  60
VGGGCRKSRR SRSTRKDDNT LQTSSPALEG APGAHDIDLA DVFAKYLNQG TNNDHDDNII  120
IQESQDYSSI GASVSNSPSS DSLVNNPTSF ENESLLDNFQ DYPCGNFLQE EQGAQINQDF  180
LDFNASFLEM QAILGQEEDQ FDHYNTSNFE WQPMMQFQDF GSILELDDHQ LMKNSSTNLA  240
SHDNNNNNNY SSFDLSNYI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072886.10.0dof zinc finger protein DOF2.5
SwissprotQ9SVC51e-42DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLM0ZJJ71e-178M0ZJJ7_SOLTU; Uncharacterized protein
STRINGSolyc04g070960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.19e-38Dof family protein