PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g028190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 231aa    MW: 26297.6 Da    PI: 6.0431
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g028190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.81.8e-2251372128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevik.evdiy.kvePwdLp.k...kvkaeek.ewyfFskrdkkyatgkrknr..atksgyWka 85 
                       + GfrF+Ptdee v  +L + ++gk ++ + +i+ +vd y + ePwd+  +   +++ ++  ++ fF+++ kk+ +++r +r   +k g Wk+
  Sopen04g028190.1   5 QEGFRFSPTDEEAV-TFLLRFIAGKLMDDSGFITfHVDTYgEQEPWDIYnQgvsCCNDNDCsQYRFFITNLKKK-SKSRYSRnvGIKGGSWKQ 95 
                       68************.8999999999988878765256877367*****73355433333332444666555555.4566666334789***** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+k++ +++g+++g kk++ +   +  k e+ +W+m+ey l
  Sopen04g028190.1  96 EDKSKPIRKSDGAVIGSKKSMCYK-TKGYKQEHGHWLMKEYDL 137
                       **********************98.56666689********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-233160IPR003441NAC domain
PROSITE profilePS5100524.9264160IPR003441NAC domain
PfamPF023651.5E-146137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MENLQEGFRF SPTDEEAVTF LLRFIAGKLM DDSGFITFHV DTYGEQEPWD IYNQGVSCCN  60
DNDCSQYRFF ITNLKKKSKS RYSRNVGIKG GSWKQEDKSK PIRKSDGAVI GSKKSMCYKT  120
KGYKQEHGHW LMKEYDLSPH ILDKFDKDCR DFVLCAIKKK KSSSKGKLNI VGEQDQSSCE  180
GLQVDAGELE LQNIDMHEGT SNLVEPLSAP VFDFDYQYSP ADFDGLRSIT A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072774.11e-173NAC domain-containing protein 91-like
TrEMBLM1CCG71e-113M1CCG7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000644971e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-14NAC domain containing protein 90