PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g028210.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 253aa    MW: 29340.5 Da    PI: 5.8468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g028210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.51.1e-2251392128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevik.evdiy.kvePwdLpk.....kvkaeek..ewy.fFskrdkkyatgkrknr.atksgyW 83 
                         GfrF+Ptd e v  +L + ++gk +e + +i+ +vd y + ePwd+ +     + +++++  + y fF+++ kk+ +++r +r + ++g W
  Sopen04g028210.1   5 KEGFRFSPTDAEAV-TFLLRFIAGKLMEDSGFITfHVDTYgEQEPWDIYNqgvscCNDHDDNdcSQYrFFITKLKKK-SKSRYSRdVGNKGSW 95 
                       68************.8999999999998878765256877367*****74466652222334343352666666655.56788886889**** PP

               NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++ k+k+v +k+g ++g kk++ +  ++  k e+ +W+m+ey+l
  Sopen04g028210.1  96 KQQDKSKPVRKKGGPVIGYKKSMCYM-NKGYKQENGHWLMKEYAL 139
                       *************************9.56666689********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-213161IPR003441NAC domain
PROSITE profilePS5100524.5664162IPR003441NAC domain
PfamPF023652.5E-146139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MENLKEGFRF SPTDAEAVTF LLRFIAGKLM EDSGFITFHV DTYGEQEPWD IYNQGVSCCN  60
DHDDNDCSQY RFFITKLKKK SKSRYSRDVG NKGSWKQQDK SKPVRKKGGP VIGYKKSMCY  120
MNKGYKQENG HWLMKEYALS AYLLDKFDKD CRDYVLCAIK KRTRIKSRSK GTMKLTNAVS  180
EECTNLEDQS SGTVESTSYD EALQELLINM PDETNMVIEP LCTFEGMPML DIDFDILPDF  240
DCMFQLLEFP KMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072775.10.0NAC domain-containing protein 78-like
TrEMBLM1D2T51e-142M1D2T5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000799901e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-10NAC domain containing protein 2