PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g028240.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 228aa MW: 26419.7 Da PI: 7.0757

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g028240.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	85	7e-27	146	204	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk + + r+YY+C+s +C+vkkkver+ +d +++ +tYeg+Hnhe Sopen04g028240.1 146 LDDGYKWRKYGKKKVKTNINLRNYYKCSSGDCKVKKKVERDGSDSRYLMTTYEGKHNHE 204 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-28	132	206	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-24	139	206	IPR003657	WRKY domain
PROSITE profile	PS50811	27.772	141	206	IPR003657	WRKY domain
SMART	SM00774	6.7E-29	146	205	IPR003657	WRKY domain
Pfam	PF03106	2.3E-20	147	204	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MFGSSTSQET TNVISHQHYQ TINPNFYAFH DPLINMNQDH VHNNNYNKYQ DYDTSFLDLL 60 VDGDQEYYSN YTNNNASIYL ENPFKQQEIS SSTYSTSGNS SSASSFDATP THVHMNNESS 120 STAIEKEKKG EKHAIAFRTK TQLETLDDGY KWRKYGKKKV KTNINLRNYY KCSSGDCKVK 180 KKVERDGSDS RYLMTTYEGK HNHESPFIIY WNEKNQANNF LNESSSSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-22	130	206	1	77	Probable WRKY transcription factor 4
2lex_A	6e-22	130	206	1	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015072957.1	1e-170	probable WRKY transcription factor 51
TrEMBL	M1D2T0	1e-124	M1D2T0_SOLTU; Uncharacterized protein
STRING	Solyc04g072070.2.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13494	12	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-24	WRKY DNA-binding protein 51