PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g028280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 231aa    MW: 26418.7 Da    PI: 6.0457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g028280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.44.9e-2251372128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevik.evdiy.kvePwdLp.k...kvkaeekewy.fFskrdkkyatgkrknr..atksgyWka 85 
                       + GfrF+Ptdee +  +L + ++gk +e + +i+ +vd y + ePwd+  +   +++ ++ + y fF+++ kk+ +++r +r    k g Wk+
  Sopen04g028280.1   5 QEGFRFSPTDEEAL-TFLLRFIAGKLMEDSGFITfHVDTYgEQEPWDIYnQgvsCCNDDDCSQYrFFITNLKKK-SKSRYSRnvGNKGGSWKQ 95 
                       68***********9.8999999999998878765256877367*****73355433334444452666555555.566777732356899*** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+k++ +++g+++g kk++ +  ++  k e+ +W+m+ey l
  Sopen04g028280.1  96 EDKSKPIRKSDGAVIGSKKSMCYK-KKGYKQEHGHWLMKEYDL 137
                       **********************98.56666689********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-233160IPR003441NAC domain
PROSITE profilePS5100524.9444160IPR003441NAC domain
PfamPF023655.4E-146137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MENLQEGFRF SPTDEEALTF LLRFIAGKLM EDSGFITFHV DTYGEQEPWD IYNQGVSCCN  60
DDDCSQYRFF ITNLKKKSKS RYSRNVGNKG GSWKQEDKSK PIRKSDGAVI GSKKSMCYKK  120
KGYKQEHGHW LMKEYDLSPH ILDKFDKDCR DFVLCAIKKK KSSSKGKLNI VGEQDQSSCE  180
GLQVDAGELE LQNIDMHEGT SNLVEPLSAP VFDFDYQYSS VDFDCLRSIT A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072777.11e-173NAC domain-containing protein 78-like
TrEMBLM1CCG71e-114M1CCG7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000644971e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-10NAC 014